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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs4290167 chr10:33432543 A/G 6.27E-11 407 15.13 18.03 5.93 KM Plot
LGG rs4307293 chr7:56020113 A/G 1.62E-10 405 15.3 16.23 7.8 KM Plot
LGG rs4317889 chr10:4929822 C/T 0.000121 407 18.27 15.52 15.18 KM Plot
LGG rs4352263 chr2:55654354 A/G 3.69E-7 398 4.6 17.65 15.17 KM Plot
LGG rs4360931 chr16:67471926 C/G 0.000119 406 15.33 15.13 19.2 KM Plot
LGG rs436790 chr19:44491927 A/G 0.000198 407 17.67 13.57 15.97 KM Plot
LGG rs437395 chr5:155985913 C/G 7.9E-7 407 13.5 15.17 15.45 KM Plot
LGG rs4380048 chr16:67538193 T/C 9.12E-6 405 15.25 15.25 19.2 KM Plot
LGG rs4423596 chr2:86865139 G/A 0 403 15.83 11.77 6.38 KM Plot
LGG rs4425604 chr6:151884252 A/G 1.03E-7 407 3.77 13.87 15.73 KM Plot
LGG rs447938 chr5:155986366 G/A 5.51E-6 405 15.27 15.23 15.37 KM Plot
LGG rs447983 chr5:155986075 C/G 4.41E-5 406 15.7 15.23 15.13 KM Plot
LGG rs4484068 chr2:55534186 C/T 2.6E-5 407 15.32 14.58 19.2 KM Plot
LGG rs4516838 chr5:155948651 A/G 5.27E-6 403 15.67 15.17 15.37 KM Plot
LGG rs4521419 chr4:108914578 A/G 3.48E-5 407 15.6 14.93 4.35 KM Plot